k-Wave

1. praveenbalaji
   

   Member
   Joined: May '20
   Posts: 1

   I am receiving the following error when I am using 'kspaceFirstOrder2DG'

   +---------------------------------------------------------------+
   | kspaceFirstOrder-CUDA v1.3 |
   +---------------------------------------------------------------+
   | Reading simulation configuration: Failed |
   +---------------------------------------------------------------+
   +---------------------------------------------------------------+
   | !!! K-Wave experienced a fatal error !!! |
   +---------------------------------------------------------------+
   | Error: Invalid format of the input file: iostream stream |
   | error |
   +---------------------------------------------------------------+
   | Execution terminated |
   +---------------------------------------------------------------+
   Error using h5readc
   The filename specified was either not found on the MATLAB path or it contains unsupported characters.

   Error in h5read (line 66)
   [data,var_class] = h5readc(Filename,Dataset,start,count,stride);

   Error in kspaceFirstOrder3DC (line 569)
   Nx = h5read(output_filename, '/Nx');

   Error in kspaceFirstOrder2DG (line 76)
   sensor_data = kspaceFirstOrder3DC(varargin{:});

   Error in forward (line 45)
   sensor_data = kspaceFirstOrder2DG(kgrid, medium, source, sensor, input_args{:});

   Error in broad_UST_data_3_ink (line 118)
   sensor_data = forward(object, time, medium, sensor);

   Kindly please help me to rectify this error.

   Posted 4 years ago #

2. Bradley Treeby
   

   Developer
   Joined: Mar '10
   Posts: 1,643

   See this post.

   Posted 4 years ago #

3. Yanfei Xiang
   

   Member
   Joined: Oct '21
   Posts: 1

   Hello praveenbalaji,

   I met same problem (pasted belov) as you described above when I used MATLAB R2019a to run some codes related k-Wave toolbox, I want to inqury have you find the solution ? Thanks a lot in advance for your reply !

   -----------------------------------------
   /bin/bash: ./kspaceFirstOrder-CUDA: Permission non accordée
   Error using h5readc
   The filename specified was either not found on the MATLAB path or it contains unsupported characters.

   Error in h5read (line 66)
   [data,var_class] = h5readc(Filename,Dataset,start,count,stride);

   Error in kspaceFirstOrder3DC (line 569)
   Nx = h5read(output_filename, '/Nx');

   Error in kspaceFirstOrder2DG (line 76)
   sensor_data = kspaceFirstOrder3DC(varargin{:});

   Error in kwave_solver (line 59)
   sensor_data = kspaceFirstOrder2DG(kgrid, medium, source, sensor, input_args{:});

   Error in parallel_kwave_solver (line 29)
   p = kwave_solver(sos_map,source_location,omega,1.,samplenum,cfl,roundtrips);
   ---------------------------------------

   Posted 3 years ago #

4. Yanfei Xiang
   

   Member
   Joined: Oct '21
   Posts: 1

   Hello praveenbalaji,

   I met same problem (pasted belov) as you described above when I used MATLAB R2019a to run some codes related k-Wave toolbox, I want to inqury have you find the solution ? Thanks a lot in advance for your reply !

   -----------------------------------------
   /bin/bash: ./kspaceFirstOrder-CUDA: Permission non accordée
   Error using h5readc
   The filename specified was either not found on the MATLAB path or it contains unsupported characters.

   Error in h5read (line 66)
   [data,var_class] = h5readc(Filename,Dataset,start,count,stride);

   Error in kspaceFirstOrder3DC (line 569)
   Nx = h5read(output_filename, '/Nx');

   Error in kspaceFirstOrder2DG (line 76)
   sensor_data = kspaceFirstOrder3DC(varargin{:});

   Error in kwave_solver (line 59)
   sensor_data = kspaceFirstOrder2DG(kgrid, medium, source, sensor, input_args{:});

   Error in parallel_kwave_solver (line 29)
   p = kwave_solver(sos_map,source_location,omega,1.,samplenum,cfl,roundtrips);
   ---------------------------------------

   Posted 3 years ago #

5. Bradley Treeby
   

   Developer
   Joined: Mar '10
   Posts: 1,643

   Hi Yanfe,

   It looks like you don't have the appropriate permissions to execute the k-Wave binary. Try e.g., chmod 755 kspaceFirstOrder-CUDA.

   Brad

   Posted 2 years ago #

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